Module `dadi.DFE`

Fitting Distributions of Fitness Effects to population genomic data, both single-population and joint.

Expand source code

"""
Fitting Distributions of Fitness Effects to population genomic data, both single-population and joint.
"""
from dadi.DFE.Cache1D_mod import Cache1D
from dadi.DFE.Cache2D_mod import Cache2D, mixture, mixture_symmetric_point_pos
from dadi.DFE import PDFs, DemogSelModels, Plotting
from .Vourlaki2022 import Vourlaki_mixture

Sub-modules

dadi.DFE.Cache1D_mod: Initially developed by Bernard Kim and published as fitdadi Kim, Huber, Lohmueller (2017) Genetics. Modified version of the script found at: …
dadi.DFE.Cache2D_mod: Developed by the Gutenkunst group, building off of the fitdadi code.
dadi.DFE.DemogSelModels: Input models of demography + selection.
dadi.DFE.PDFs: Probability density functions for defining DFEs.
dadi.DFE.PDFs_c: This module 'PDFs_c' is auto-generated with f2py (version:1.21.2).

Functions

output = biv_lognormal(xx,yy,params) y = gamma_func(z) output = …
dadi.DFE.Plotting: Miscellaneous functions for plotting DFEs
dadi.DFE.Vourlaki2022

Sub-modules

Functions