Module dadi.TwoLocus

Fitting models to data summarized by pairs of loci, incorporating both allele frequencies and linkage disequilibrium

"""
Fitting models to data summarized by pairs of loci, incorporating both allele frequencies and linkage disequilibrium
"""
from . import numerics, integration, demographics, inference, plotting, TLSpectrum_mod
TLSpectrum = TLSpectrum_mod.TLSpectrum

Sub-modules

dadi.TwoLocus.TLSpectrum_mod

Contains triallelic Spectrum object

dadi.TwoLocus.demographics

dadi.TwoLocus.inference

dadi.TwoLocus.integration

dadi.TwoLocus.numerics

methods for numerics of two locus diffusion - grids, transition matrices, etc

dadi.TwoLocus.plotting

dadi.TwoLocus.projection_genotypes

dadi.TwoLocus.surface_interaction

dadi.TwoLocus.transition1

dadi.TwoLocus.transition12

dadi.TwoLocus.transition13

dadi.TwoLocus.transition1D

dadi.TwoLocus.transition2

dadi.TwoLocus.transition23

dadi.TwoLocus.transition3