dadi
Triallele
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dadi
GitHub
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User Guide
User Guide
Installation
Importing data
Manipulating spectra
Specifying a model
Simulation and fitting
Plotting
Bootstrapping
Uncertainty analysis
Likelihood ratio test
Triallelic spectra
DFE inference
Inbreeding
Low-Pass
Polyploid subgenomes
GPU computing
Demes integration
Frequently asked questions
References
Examples
Examples
Frequency spectrum from data
Demography inference for YRI and CEU
DFE inference
Triallelic model
Two Locus model
Basic Workflow 1D Demographics
Basic Workflow 2D Demographics
Basic Workflow Cache Generation
Basic Workflow 1D DFE
Basic Workflow 2D DFE
Low-Pass Example
API
API
dadi
dadi
DFE
DFE
Cache1D_mod
Cache2D_mod
DemogSelModels
PDFs
Plotting
Vourlaki2022
Demes
Demes
Demes
DemesUtil
Inference
Demographics1D
Demographics2D
Demographics3D
Godambe
Inference
Integration
LowPass
LowPass
LowPass
Misc
NLopt_mod
Numerics
PhiManip
Plotting
PortikModels
PortikModels
portik_models_2d
portik_models_3d
Spectrum_mod
Triallele
Triallele
TriSpectrum_mod
demographics
integration
numerics
plotting
TwoLocus
TwoLocus
TLSpectrum_mod
demographics
inference
integration
numerics
plotting
Triallele
Modeling triallelic data.